Human SNP ID | rs2055011 |
---|---|
Human chromosome | chr21 |
Human SNP position | 18109036 |
Pig chromosome | chr13 |
Pig SNP position | 192848717 |
PubMed ID | 23648065 |
---|---|
Journal | Cancer Sci |
Link | www.ncbi.nlm.nih.gov/pubmed/23648065 |
Study | Genome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan. |
Disease/Trait | Adverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs) |
Initial sample | 294 Japanese ancestry cases, 2,249 Japanese ancestry controls |
Replication sample | NA |
Region | 21q21.1 |
Chromosome id | chr21 |
Chromosome position | 18109036 |
Reported gene | CHODL |
Mapped gene | CHODL |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 140578 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2055011-C |
SNPs | rs2055011 |
Merged | 0 |
SNP id current | 2055011 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.143 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Recessive model) |
Or beta | 1.347 |
%95 Ci | [1.075-1.686] |
Platform | Illumina [733202] |
CNV | N |
Mapped trait | response to antineoplastic agent, response to antimetabolite |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0097327, http://purl.obolibrary.org/obo/GO_0097329 |
Study accession | GCST002005 |