SNP Detail For rs2055011
1.Mapping Information
Human SNP ID rs2055011
Human chromosome chr21
Human SNP position 18109036
Pig chromosome chr13
Pig SNP position 192848717
2.Annotation Information
PubMed ID23648065
JournalCancer Sci
Linkwww.ncbi.nlm.nih.gov/pubmed/23648065
StudyGenome-wide association study of chemotherapeutic agent-induced severe neutropenia/leucopenia for patients in Biobank Japan.
Disease/TraitAdverse response to chemotherapy (neutropenia/leucopenia) (all antimetabolite drugs)
Initial sample294 Japanese ancestry cases, 2,249 Japanese ancestry controls
Replication sampleNA
Region21q21.1
Chromosome idchr21
Chromosome position18109036
Reported geneCHODL
Mapped geneCHODL
Upstream gene id
Downstream gene id
SNP gene ids140578
Upstream gene distance
Downstream gene distance
SNP risk allelers2055011-C
SNPsrs2055011
Merged0
SNP id current2055011
Contextintron_variant
Intergenic0
Allele frequency0.143
P value0.000009
Pvalue mlog5.04575749056067
P value text(Recessive model)
Or beta1.347
%95 Ci[1.075-1.686]
PlatformIllumina [733202]
CNVN
Mapped traitresponse to antineoplastic agent, response to antimetabolite
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0097327, http://purl.obolibrary.org/obo/GO_0097329
Study accessionGCST002005