Human SNP ID | rs2043085 |
---|---|
Human chromosome | chr15 |
Human SNP position | 58388755 |
Pig chromosome | chr1 |
Pig SNP position | 125713178 |
PubMed ID | 21386085 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/21386085 |
Study | A bivariate genome-wide approach to metabolic syndrome: STAMPEED consortium. |
Disease/Trait | Metabolic syndrome (bivariate traits) |
Initial sample | 22,161 European ancestry individuals |
Replication sample | NA |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58388755 |
Reported gene | LIPC |
Mapped gene | LOC101928635 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2043085-A |
SNPs | rs2043085 |
Merged | 0 |
SNP id current | 2043085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000001 |
Pvalue mlog | 8 |
P value text | (HDLC-GLUC) |
Or beta | 0.17 |
%95 Ci | [0.11-0.23] unit decrease |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | metabolic syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000195 |
Study accession | GCST001007 |
PubMed ID | 24386095 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24386095 |
Study | A genome wide association study identifies common variants associated with lipid levels in the Chinese population. |
Disease/Trait | Lipid traits |
Initial sample | 3,451 Han Chinese ancestry individuals |
Replication sample | 8,830 Han Chinese ancestry individuals |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58388755 |
Reported gene | LIPC |
Mapped gene | LOC101928635 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2043085-T |
SNPs | rs2043085 |
Merged | 0 |
SNP id current | 2043085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.47 |
P value | 0.00000002 |
Pvalue mlog | 7.69897000433601 |
P value text | (HDL) |
Or beta | 0.012 |
%95 Ci | [0.00024-0.02376] mmol/L increase |
Platform | Affymetrix, Illumina [up to 2249917] (imputed) |
CNV | N |
Mapped trait | high density lipoprotein cholesterol measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004612 |
Study accession | GCST002321 |
PubMed ID | 26691988 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/26691988 |
Study | A large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants. |
Disease/Trait | Advanced age-related macular degeneration |
Initial sample | 16,144 European ancestry cases, 17,832 European ancestry controls |
Replication sample | 473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls |
Region | 15q21.3 |
Chromosome id | chr15 |
Chromosome position | 58388755 |
Reported gene | LIPC |
Mapped gene | LOC101928635 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101928635 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2043085-? |
SNPs | rs2043085 |
Merged | 0 |
SNP id current | 2043085 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000000000000004 |
Pvalue mlog | 14.397940008672 |
P value text | (EA) |
Or beta | 1.1494253 |
%95 Ci | |
Platform | Illumina [12023830] (imputed) |
CNV | N |
Mapped trait | age-related macular degeneration, wet macular degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001365, http://www.ebi.ac.uk/efo/EFO_0004683 |
Study accession | GCST003219 |