SNP Detail For rs2039553
1.Mapping Information
Human SNP ID rs2039553
Human chromosome chr13
Human SNP position 79725587
Pig chromosome chr11
Pig SNP position 56497516
2.Annotation Information
PubMed ID20686608
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/20686608
StudyGenome-wide association study of pancreatic cancer in Japanese population.
Disease/TraitPancreatic cancer
Initial sample991 Japanese ancestry cases, 5,209 Japanese ancestry controls
Replication sampleNA
Region13q31.1
Chromosome idchr13
Chromosome position79725587
Reported geneNDFIP2
Mapped geneLINC01068 - LINC01038
Upstream gene id103724388
Downstream gene id102724076
SNP gene ids
Upstream gene distance154141
Downstream gene distance78799
SNP risk allelers2039553-A
SNPsrs2039553
Merged0
SNP id current2039553
Contextintergenic_variant
Intergenic1
Allele frequency0.27
P value0.000007
Pvalue mlog5.15490195998574
P value text(recessive)
Or beta1.73
%95 Ci[1.36-2.19]
PlatformIllumina [420236]
CNVN
Mapped traitpancreatic carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0002618
Study accessionGCST000745