Human SNP ID | rs2039553 |
---|---|
Human chromosome | chr13 |
Human SNP position | 79725587 |
Pig chromosome | chr11 |
Pig SNP position | 56497516 |
PubMed ID | 20686608 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/20686608 |
Study | Genome-wide association study of pancreatic cancer in Japanese population. |
Disease/Trait | Pancreatic cancer |
Initial sample | 991 Japanese ancestry cases, 5,209 Japanese ancestry controls |
Replication sample | NA |
Region | 13q31.1 |
Chromosome id | chr13 |
Chromosome position | 79725587 |
Reported gene | NDFIP2 |
Mapped gene | LINC01068 - LINC01038 |
Upstream gene id | 103724388 |
Downstream gene id | 102724076 |
SNP gene ids | |
Upstream gene distance | 154141 |
Downstream gene distance | 78799 |
SNP risk allele | rs2039553-A |
SNPs | rs2039553 |
Merged | 0 |
SNP id current | 2039553 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.27 |
P value | 0.000007 |
Pvalue mlog | 5.15490195998574 |
P value text | (recessive) |
Or beta | 1.73 |
%95 Ci | [1.36-2.19] |
Platform | Illumina [420236] |
CNV | N |
Mapped trait | pancreatic carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0002618 |
Study accession | GCST000745 |