SNP Detail For rs2038823
1.Mapping Information
Human SNP ID rs2038823
Human chromosome chr13
Human SNP position 96299179
Pig chromosome chr11
Pig SNP position 72718156
2.Annotation Information
PubMed ID21310492
JournalOphthalmology
Linkwww.ncbi.nlm.nih.gov/pubmed/21310492
StudyGenome-wide association study of diabetic retinopathy in a Taiwanese population.
Disease/TraitDiabetic retinopathy
Initial sample174 Han Chinese ancestry Type 2 diabetes cases, 575 Han Chinese ancestry Type 2 diabetes controls, 100 Han Chinese ancestry non-diabetic controls
Replication sampleNA
Region13q32.1
Chromosome idchr13
Chromosome position96299179
Reported geneHS6ST3
Mapped geneHS6ST3
Upstream gene id
Downstream gene id
SNP gene ids266722
Upstream gene distance
Downstream gene distance
SNP risk allelers2038823-C
SNPsrs2038823
Merged0
SNP id current2038823
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000005
Pvalue mlog10.3010299956639
P value text
Or beta
%95 Ci
PlatformIllumina [~ 550000]
CNVN
Mapped traitdiabetic retinopathy
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003770
Study accessionGCST000966