Human SNP ID | rs2036402 |
---|---|
Human chromosome | chr5 |
Human SNP position | 157037231 |
Pig chromosome | chr16 |
Pig SNP position | 72109414 |
PubMed ID | 23505323 |
---|---|
Journal | J Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23505323 |
Study | Genomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci. |
Disease/Trait | Hypertriglyceridemia |
Initial sample | 1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls |
Replication sample | 1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls |
Region | 5q33.3 |
Chromosome id | chr5 |
Chromosome position | 157037231 |
Reported gene | TIMD4, HAVCR1, HAVCR2 |
Mapped gene | HAVCR1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26762 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2036402-? |
SNPs | rs2036402 |
Merged | 0 |
SNP id current | 2036402 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.45 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | |
Or beta | 1.23 |
%95 Ci | [1.15-1.31] |
Platform | Illumina [1361436] (imputed) |
CNV | N |
Mapped trait | triglyceride measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004530 |
Study accession | GCST001905 |