SNP Detail For rs2036402
1.Mapping Information
Human SNP ID rs2036402
Human chromosome chr5
Human SNP position 157037231
Pig chromosome chr16
Pig SNP position 72109414
2.Annotation Information
PubMed ID23505323
JournalJ Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23505323
StudyGenomic study in Mexicans identifies a new locus for triglycerides and refines European lipid loci.
Disease/TraitHypertriglyceridemia
Initial sample1,122 Mexican ancestry cases, 1,118 Mexican ancestry controls
Replication sample1,067 Mexican ancestry cases, 1,054 Mexican ancestry controls
Region5q33.3
Chromosome idchr5
Chromosome position157037231
Reported geneTIMD4, HAVCR1, HAVCR2
Mapped geneHAVCR1
Upstream gene id
Downstream gene id
SNP gene ids26762
Upstream gene distance
Downstream gene distance
SNP risk allelers2036402-?
SNPsrs2036402
Merged0
SNP id current2036402
Contextintron_variant
Intergenic0
Allele frequency0.45
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1.23
%95 Ci[1.15-1.31]
PlatformIllumina [1361436] (imputed)
CNVN
Mapped traittriglyceride measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004530
Study accessionGCST001905