Human SNP ID | rs2032224 |
---|---|
Human chromosome | chr18 |
Human SNP position | 63509033 |
Pig chromosome | chr1 |
Pig SNP position | 175642602 |
PubMed ID | 24025145 |
---|---|
Journal | Breast Cancer Res |
Link | www.ncbi.nlm.nih.gov/pubmed/24025145 |
Study | A genome-wide association study of chemotherapy-induced alopecia in breast cancer patients. |
Disease/Trait | Adverse response to chemotherapy in breast cancer (alopecia) (anti-microtubule) |
Initial sample | 119 Japanese ancestry cases, 105 Japanese ancestry controls |
Replication sample | NA |
Region | 18q21.33 |
Chromosome id | chr18 |
Chromosome position | 63509033 |
Reported gene | SERPINB5 |
Mapped gene | SERPINB5 - SERPINB12 |
Upstream gene id | 5268 |
Downstream gene id | 89777 |
SNP gene ids | |
Upstream gene distance | 3948 |
Downstream gene distance | 10057 |
SNP risk allele | rs2032224-A |
SNPs | rs2032224 |
Merged | 0 |
SNP id current | 2032224 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.62 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | (Recessive) |
Or beta | 2.16 |
%95 Ci | [1.42-3.27] |
Platform | Illumina [555600] |
CNV | N |
Mapped trait | chemotherapy-induced alopecia, response to antimicrotubule agent |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005400, http://www.ebi.ac.uk/efo/EFO_0005260 |
Study accession | GCST002177 |