SNP Detail For rs2028414
1.Mapping Information
Human SNP ID rs2028414
Human chromosome chr14
Human SNP position 104883051
Pig chromosome chr7
Pig SNP position 131214968
2.Annotation Information
PubMed ID23382691
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23382691
StudyLoci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers.
Disease/TraitIgG glycosylation
Initial sample2,247 European ancestry individuals
Replication sampleNA
Region14q32.33
Chromosome idchr14
Chromosome position104883051
Reported geneNR
Mapped geneCEP170B
Upstream gene id
Downstream gene id
SNP gene ids283638
Upstream gene distance
Downstream gene distance
SNP risk allelers2028414-C
SNPsrs2028414
Merged0
SNP id current2028414
Contextsynonymous_variant
Intergenic0
Allele frequency0.635674106107891
P value0.000008
Pvalue mlog5.09691001300805
P value text(IGP33)
Or beta0.1399
%95 Ci[0.079-0.201] unit increase
PlatformIllumina [~ 2500000] (imputed)
CNVN
Mapped traitserum IgG glycosylation measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005193
Study accessionGCST001848