Human SNP ID | rs2027760 |
---|---|
Human chromosome | chr11 |
Human SNP position | 73325436 |
Pig chromosome | chr9 |
Pig SNP position | 8577167 |
PubMed ID | 23284291 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
Disease/Trait | Pulmonary function (interaction) |
Initial sample | 50,047 European ancestry individuals |
Replication sample | NA |
Region | 11q13.4 |
Chromosome id | chr11 |
Chromosome position | 73325436 |
Reported gene | ARHGEF |
Mapped gene | ARHGEF17 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9828 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2027760-A |
SNPs | rs2027760 |
Merged | 0 |
SNP id current | 2027760 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | (FEV1/FVC, Ever-smoking) |
Or beta | |
%95 Ci | |
Platform | NR [~ 2500000] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001784 |
PubMed ID | 23284291 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
Disease/Trait | Pulmonary function (interaction) |
Initial sample | 50,047 European ancestry individuals |
Replication sample | NA |
Region | 11q13.4 |
Chromosome id | chr11 |
Chromosome position | 73325436 |
Reported gene | ARHGEF |
Mapped gene | ARHGEF17 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9828 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2027760-A |
SNPs | rs2027760 |
Merged | 0 |
SNP id current | 2027760 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (FEV1/FVC, Pack-years) |
Or beta | |
%95 Ci | |
Platform | NR [~ 2500000] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001784 |