SNP Detail For rs2027760
1.Mapping Information
Human SNP ID rs2027760
Human chromosome chr11
Human SNP position 73325436
Pig chromosome chr9
Pig SNP position 8577167
2.Annotation Information
PubMed ID23284291
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23284291
StudyGenome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
Disease/TraitPulmonary function (interaction)
Initial sample50,047 European ancestry individuals
Replication sampleNA
Region11q13.4
Chromosome idchr11
Chromosome position73325436
Reported geneARHGEF
Mapped geneARHGEF17
Upstream gene id
Downstream gene id
SNP gene ids9828
Upstream gene distance
Downstream gene distance
SNP risk allelers2027760-A
SNPsrs2027760
Merged0
SNP id current2027760
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000004
Pvalue mlog6.39794000867203
P value text(FEV1/FVC, Ever-smoking)
Or beta
%95 Ci
PlatformNR [~ 2500000] (imputed)
CNVN
Mapped traitFEV/FEC ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST001784
PubMed ID23284291
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23284291
StudyGenome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function.
Disease/TraitPulmonary function (interaction)
Initial sample50,047 European ancestry individuals
Replication sampleNA
Region11q13.4
Chromosome idchr11
Chromosome position73325436
Reported geneARHGEF
Mapped geneARHGEF17
Upstream gene id
Downstream gene id
SNP gene ids9828
Upstream gene distance
Downstream gene distance
SNP risk allelers2027760-A
SNPsrs2027760
Merged0
SNP id current2027760
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(FEV1/FVC, Pack-years)
Or beta
%95 Ci
PlatformNR [~ 2500000] (imputed)
CNVN
Mapped traitFEV/FEC ratio
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004713
Study accessionGCST001784