SNP Detail For rs2027099
1.Mapping Information
Human SNP ID rs2027099
Human chromosome chr13
Human SNP position 66468960
Pig chromosome chr11
Pig SNP position 41974679
2.Annotation Information
PubMed ID26053186
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/26053186
StudyMercapturic Acids Derived from the Toxicants Acrolein and Crotonaldehyde in the Urine of Cigarette Smokers from Five Ethnic Groups with Differing Risks for Lung Cancer.
Disease/Trait3-hydroxy-1-methylpropylmercapturic acid levels in smokers
Initial sample361 African American current smoker individuals, 329 Native Hawaiian ancestry current smoker individuals, 440 European ancestry current smoker individuals, 452 Latino current smoker individuals, 702 Japanese ancestry current smoker individuals
Replication sampleNA
Region13q21.32
Chromosome idchr13
Chromosome position66468960
Reported geneNR
Mapped genePCDH9
Upstream gene id
Downstream gene id
SNP gene ids5101
Upstream gene distance
Downstream gene distance
SNP risk allelers2027099-?
SNPsrs2027099
Merged
SNP id current2027099
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text(Native Hawaiian)
Or beta0.2073
%95 Ci[NR] unit decrease
PlatformIllumina [up to 11892802] (imputed)
CNVN
Mapped traitsmoking behavior, 3-hydroxy-1-methylpropylmercapturic acid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004318, http://www.ebi.ac.uk/efo/EFO_0007015
Study accessionGCST002957