Human SNP ID | rs2023472 |
---|---|
Human chromosome | chr6 |
Human SNP position | 30108087 |
Pig chromosome | chr7 |
Pig SNP position | 24952642 |
PubMed ID | 23417110 |
---|---|
Journal | Hum Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23417110 |
Study | Genome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin. |
Disease/Trait | Beta-2 microglubulin plasma levels |
Initial sample | 6,728 European ancestry individuals |
Replication sample | |
Region | 6p22.1 |
Chromosome id | chr6 |
Chromosome position | 30108087 |
Reported gene | TRIM31 |
Mapped gene | TRIM31-AS1, TRIM31 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 104533120, 11074 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2023472-A |
SNPs | rs2023472 |
Merged | 0 |
SNP id current | 2023472 |
Context | synonymous_variant |
Intergenic | 0 |
Allele frequency | 0.38 |
P value | 0.000000000000003 |
Pvalue mlog | 14.5228787452803 |
P value text | |
Or beta | 0.03 |
%95 Ci | [0.022-0.038] unit increase |
Platform | Affymetrix [2500000] (imputed) |
CNV | N |
Mapped trait | beta-2 microglobulin measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005197 |
Study accession | GCST001863 |