SNP Detail For rs2023472
1.Mapping Information
Human SNP ID rs2023472
Human chromosome chr6
Human SNP position 30108087
Pig chromosome chr7
Pig SNP position 24952642
2.Annotation Information
PubMed ID23417110
JournalHum Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23417110
StudyGenome-wide association study identified the human leukocyte antigen region as a novel locus for plasma beta-2 microglobulin.
Disease/TraitBeta-2 microglubulin plasma levels
Initial sample6,728 European ancestry individuals
Replication sample
Region6p22.1
Chromosome idchr6
Chromosome position30108087
Reported geneTRIM31
Mapped geneTRIM31-AS1, TRIM31
Upstream gene id
Downstream gene id
SNP gene ids104533120, 11074
Upstream gene distance
Downstream gene distance
SNP risk allelers2023472-A
SNPsrs2023472
Merged0
SNP id current2023472
Contextsynonymous_variant
Intergenic0
Allele frequency0.38
P value0.000000000000003
Pvalue mlog14.5228787452803
P value text
Or beta0.03
%95 Ci[0.022-0.038] unit increase
PlatformAffymetrix [2500000] (imputed)
CNVN
Mapped traitbeta-2 microglobulin measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005197
Study accessionGCST001863