SNP Detail For rs2020921
1.Mapping Information
Human SNP ID rs2020921
Human chromosome chr8
Human SNP position 42187447
Pig chromosome chr17
Pig SNP position 13179377
2.Annotation Information
PubMed ID24578379
JournalArterioscler Thromb Vasc Biol
Linkwww.ncbi.nlm.nih.gov/pubmed/24578379
StudyGenome-wide association study for circulating tissue plasminogen activator levels and functional follow-up implicates endothelial STXBP5 and STX2.
Disease/TraitPlasma plasminogen activator levels
Initial sample26,217 European ancestry individuals, 712 Orcadian individuals
Replication sample4,487 European ancestry individuals
Region8p11.21
Chromosome idchr8
Chromosome position42187447
Reported genePLAT
Mapped genePLAT
Upstream gene id
Downstream gene id
SNP gene ids5327
Upstream gene distance
Downstream gene distance
SNP risk allelers2020921-G
SNPsrs2020921
Merged0
SNP id current2020921
Contextmissense_variant
Intergenic0
Allele frequency0.95
P value0.00000002
Pvalue mlog7.69897000433601
P value text
Or beta0.067
%95 Ci[0.043-0.091] unit increase
PlatformAffymetrix, Illumina [2455857] (imputed)
CNVN
Mapped traittissue plasminogen activator measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004791
Study accessionGCST002374