Human SNP ID | rs2017305 |
---|---|
Human chromosome | chr10 |
Human SNP position | 68952306 |
Pig chromosome | chr14 |
Pig SNP position | 78052158 |
PubMed ID | 20800221 |
---|---|
Journal | Biol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/20800221 |
Study | Genome-wide association scan of trait depression. |
Disease/Trait | Depression (quantitative trait) |
Initial sample | 3,972 Sardinian individuals, 839 European ancestry individuals |
Replication sample | NA |
Region | 10q22.1 |
Chromosome id | chr10 |
Chromosome position | 68952306 |
Reported gene | DDX21 |
Mapped gene | DDX50 - DDX21 |
Upstream gene id | 79009 |
Downstream gene id | 9188 |
SNP gene ids | |
Upstream gene distance | 5459 |
Downstream gene distance | 3817 |
SNP risk allele | rs2017305-A |
SNPs | rs2017305 |
Merged | 0 |
SNP id current | 2017305 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.92 |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.22 |
%95 Ci | [NR] unit decrease |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | unipolar depression |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003761 |
Study accession | GCST000779 |