SNP Detail For rs2017305
1.Mapping Information
Human SNP ID rs2017305
Human chromosome chr10
Human SNP position 68952306
Pig chromosome chr14
Pig SNP position 78052158
2.Annotation Information
PubMed ID20800221
JournalBiol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/20800221
StudyGenome-wide association scan of trait depression.
Disease/TraitDepression (quantitative trait)
Initial sample3,972 Sardinian individuals, 839 European ancestry individuals
Replication sampleNA
Region10q22.1
Chromosome idchr10
Chromosome position68952306
Reported geneDDX21
Mapped geneDDX50 - DDX21
Upstream gene id79009
Downstream gene id9188
SNP gene ids
Upstream gene distance5459
Downstream gene distance3817
SNP risk allelers2017305-A
SNPsrs2017305
Merged0
SNP id current2017305
Contextupstream_gene_variant
Intergenic1
Allele frequency0.92
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.22
%95 Ci[NR] unit decrease
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitunipolar depression
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003761
Study accessionGCST000779