Human SNP ID | rs2016325 |
---|---|
Human chromosome | chr7 |
Human SNP position | 66858513 |
Pig chromosome | chr3 |
Pig SNP position | 11500010 |
PubMed ID | 26121980 |
---|---|
Journal | BMC Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/26121980 |
Study | Genome-wide association analysis identified splicing single nucleotide polymorphism in CFLAR predictive of triptolide chemo-sensitivity. |
Disease/Trait | Triptolide cytotoxicity |
Initial sample | 55 European ancestry lymphoblastoid cell lines |
Replication sample | NA |
Region | 7q11.21 |
Chromosome id | chr7 |
Chromosome position | 66858513 |
Reported gene | intergenic |
Mapped gene | LOC101929580 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 101929580 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2016325-? |
SNPs | rs2016325 |
Merged | |
SNP id current | 2016325 |
Context | downstream_gene_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000008 |
Pvalue mlog | 5.09691001300805 |
P value text | |
Or beta | 0.56 |
%95 Ci | unit increase |
Platform | NR [at least 1978803] (imputed) |
CNV | N |
Mapped trait | response to triptolide, cytotoxicity measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0007662, http://www.ebi.ac.uk/efo/EFO_0006952 |
Study accession | GCST003008 |