SNP Detail For rs201459901
1.Mapping Information
Human SNP ID rs201459901
Human chromosome chr20
Human SNP position 58078669
Pig chromosome chr17
Pig SNP position 65524136
2.Annotation Information
PubMed ID26691988
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26691988
StudyA large genome-wide association study of age-related macular degeneration highlights contributions of rare and common variants.
Disease/TraitAdvanced age-related macular degeneration
Initial sample16,144 European ancestry cases, 17,832 European ancestry controls
Replication sample473 Asian ancestry cases, 1,099 Asian ancestry controls, 52 African ancestry cases, 361 African ancestry cases, 254 other non-European ancestry cases, 694 other non-European ancestry controls
Region20q13.32
Chromosome idchr20
Chromosome position58078669
Reported geneC20orf85
Mapped geneLOC105376992 - HSPD1P19
Upstream gene id105376992
Downstream gene id100463288
SNP gene ids
Upstream gene distance74089
Downstream gene distance18553
SNP risk allelers201459901-?
SNPsrs201459901
Merged0
SNP id current201459901
Contextintergenic_variant
Intergenic1
Allele frequencyNR
P value0.0000000000000003
Pvalue mlog15.5228787452803
P value text(EA)
Or beta1.3157895
%95 Ci
PlatformIllumina [12023830] (imputed)
CNVN
Mapped traitage-related macular degeneration, wet macular degeneration
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001365, http://www.ebi.ac.uk/efo/EFO_0004683
Study accessionGCST003219