SNP Detail For rs2007044
1.Mapping Information
Human SNP ID rs2007044
Human chromosome chr12
Human SNP position 2235794
Pig chromosome chr5
Pig SNP position 71462533
2.Annotation Information
PubMed ID25056061
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/25056061
StudyBiological insights from 108 schizophrenia-associated genetic loci.
Disease/TraitSchizophrenia
Initial sample32,405 European ancestry cases, 42,221 European ancestry controls, 1,235 European ancestry cases and 1,235 European ancestry controls from 1235 parent-offspring trios, 1,836 East Asian ancestry cases, 3,383 East Asian ancestry controls
Replication sample1,513 European ancestry cases, 66,236 European ancestry controls
Region12p13.33
Chromosome idchr12
Chromosome position2235794
Reported geneCACNA1C
Mapped geneCACNA1C
Upstream gene id
Downstream gene id
SNP gene ids775
Upstream gene distance
Downstream gene distance
SNP risk allelers2007044-G
SNPsrs2007044
Merged0
SNP id current2007044
Contextintron_variant
Intergenic0
Allele frequency0.376
P value0.000000000000000003
Pvalue mlog17.5228787452803
P value text
Or beta1.0964912
%95 Ci[1.07-1.12]
PlatformAffymetrix, Illumina [9005918] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST002539
PubMed ID26198764
JournalAm J Med Genet B Neuropsychiatr Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/26198764
StudyGenome-wide association study of schizophrenia in Ashkenazi Jews.
Disease/TraitSchizophrenia
Initial sample592 Ashkenazi Jewish ancestry cases, 505 Ashkenazi Jewish ancestry controls, 36,989 cases, 113,075 controls
Replication sampleNA
Region12p13.33
Chromosome idchr12
Chromosome position2235794
Reported geneNR
Mapped geneCACNA1C
Upstream gene id
Downstream gene id
SNP gene ids775
Upstream gene distance
Downstream gene distance
SNP risk allelers2007044-G
SNPsrs2007044
Merged0
SNP id current2007044
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000000001
Pvalue mlog17
P value text
Or beta1.098901
%95 Ci[NR]
PlatformIllumina [7158791] (imputed)
CNVN
Mapped traitschizophrenia
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000692
Study accessionGCST003048