SNP Detail For rs2006970
1.Mapping Information
Human SNP ID rs2006970
Human chromosome chr4
Human SNP position 43318490
Pig chromosome chr8
Pig SNP position 35804861
2.Annotation Information
PubMed ID23319000
JournalMol Psychiatry
Linkwww.ncbi.nlm.nih.gov/pubmed/23319000
StudyGenome-wide association study of monoamine metabolite levels in human cerebrospinal fluid.
Disease/TraitMetabolite levels (5-HIAA/ MHPG Ratio)
Initial sampleup to 398 European ancestry individuals
Replication sampleNA
Region4p13
Chromosome idchr4
Chromosome position43318490
Reported geneintergenic
Mapped geneLOC105374433, LOC105374434
Upstream gene id
Downstream gene id
SNP gene ids105374433, 105374434
Upstream gene distance
Downstream gene distance
SNP risk allelers2006970-C
SNPsrs2006970
Merged0
SNP id current2006970
Contextintergenic_variant
Intergenic0
Allele frequency
P value0.000009
Pvalue mlog5.04575749056067
P value text
Or beta0.2674
%95 Ciunit decrease
PlatformIllumina [5767231] (imputed)
CNVN
Mapped traitMHPG measurement, 5-HIAA measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132
Study accessionGCST001821