Human SNP ID | rs2006970 |
---|---|
Human chromosome | chr4 |
Human SNP position | 43318490 |
Pig chromosome | chr8 |
Pig SNP position | 35804861 |
PubMed ID | 23319000 |
---|---|
Journal | Mol Psychiatry |
Link | www.ncbi.nlm.nih.gov/pubmed/23319000 |
Study | Genome-wide association study of monoamine metabolite levels in human cerebrospinal fluid. |
Disease/Trait | Metabolite levels (5-HIAA/ MHPG Ratio) |
Initial sample | up to 398 European ancestry individuals |
Replication sample | NA |
Region | 4p13 |
Chromosome id | chr4 |
Chromosome position | 43318490 |
Reported gene | intergenic |
Mapped gene | LOC105374433, LOC105374434 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 105374433, 105374434 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2006970-C |
SNPs | rs2006970 |
Merged | 0 |
SNP id current | 2006970 |
Context | intergenic_variant |
Intergenic | 0 |
Allele frequency | |
P value | 0.000009 |
Pvalue mlog | 5.04575749056067 |
P value text | |
Or beta | 0.2674 |
%95 Ci | unit decrease |
Platform | Illumina [5767231] (imputed) |
CNV | N |
Mapped trait | MHPG measurement, 5-HIAA measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0005133, http://www.ebi.ac.uk/efo/EFO_0005132 |
Study accession | GCST001821 |