Human SNP ID | rs2005705 |
---|---|
Human chromosome | chr17 |
Human SNP position | 37736310 |
Pig chromosome | chr12 |
Pig SNP position | 40838603 |
PubMed ID | 24740154 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/24740154 |
Study | Genome-wide association scan for variants associated with early-onset prostate cancer. |
Disease/Trait | Prostate cancer (early onset) |
Initial sample | 931 European ancestry cases, 4,120 European ancestry controls |
Replication sample | 2,571 European ancestry cases, 921 European ancestry controls |
Region | 17q12 |
Chromosome id | chr17 |
Chromosome position | 37736310 |
Reported gene | TCF2 |
Mapped gene | HNF1B |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 6928 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs2005705-G |
SNPs | rs2005705 |
Merged | 0 |
SNP id current | 2005705 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.56 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 1.35 |
%95 Ci | [1.23-1.47] |
Platform | Illumina [2639562] (imputed) |
CNV | N |
Mapped trait | prostate carcinoma |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001663 |
Study accession | GCST002413 |