SNP Detail For rs2005705
1.Mapping Information
Human SNP ID rs2005705
Human chromosome chr17
Human SNP position 37736310
Pig chromosome chr12
Pig SNP position 40838603
2.Annotation Information
PubMed ID24740154
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/24740154
StudyGenome-wide association scan for variants associated with early-onset prostate cancer.
Disease/TraitProstate cancer (early onset)
Initial sample931 European ancestry cases, 4,120 European ancestry controls
Replication sample2,571 European ancestry cases, 921 European ancestry controls
Region17q12
Chromosome idchr17
Chromosome position37736310
Reported geneTCF2
Mapped geneHNF1B
Upstream gene id
Downstream gene id
SNP gene ids6928
Upstream gene distance
Downstream gene distance
SNP risk allelers2005705-G
SNPsrs2005705
Merged0
SNP id current2005705
Contextintron_variant
Intergenic0
Allele frequency0.56
P value0.000001
Pvalue mlog6
P value text
Or beta1.35
%95 Ci[1.23-1.47]
PlatformIllumina [2639562] (imputed)
CNVN
Mapped traitprostate carcinoma
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001663
Study accessionGCST002413