SNP Detail For rs2000260
1.Mapping Information
Human SNP ID rs2000260
Human chromosome chr1
Human SNP position 108130783
Pig chromosome chr4
Pig SNP position 122131872
2.Annotation Information
PubMed ID25017104
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25017104
StudyGenome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease.
Disease/TraitEosinophilic esophagitis
Initial sample657 European ancestry cases, 9,296 European ancestry controls
Replication sampleNA
Region1p13.3
Chromosome idchr1
Chromosome position108130783
Reported geneSLC25A24
Mapped geneVAV3-AS1 - SLC25A24
Upstream gene id100873946
Downstream gene id29957
SNP gene ids
Upstream gene distance136176
Downstream gene distance3939
SNP risk allelers2000260-A
SNPsrs2000260
Merged0
SNP id current2000260
Contextdownstream_gene_variant
Intergenic1
Allele frequency0.57
P value0.0000007
Pvalue mlog6.15490195998574
P value text
Or beta1.32
%95 Ci[NR]
PlatformIllumina [1468075]
CNVN
Mapped traiteosinophilic esophagitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004232
Study accessionGCST002527