Human SNP ID | rs2000260 |
---|---|
Human chromosome | chr1 |
Human SNP position | 108130783 |
Pig chromosome | chr4 |
Pig SNP position | 122131872 |
PubMed ID | 25017104 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25017104 |
Study | Genome-wide association analysis of eosinophilic esophagitis provides insight into the tissue specificity of this allergic disease. |
Disease/Trait | Eosinophilic esophagitis |
Initial sample | 657 European ancestry cases, 9,296 European ancestry controls |
Replication sample | NA |
Region | 1p13.3 |
Chromosome id | chr1 |
Chromosome position | 108130783 |
Reported gene | SLC25A24 |
Mapped gene | VAV3-AS1 - SLC25A24 |
Upstream gene id | 100873946 |
Downstream gene id | 29957 |
SNP gene ids | |
Upstream gene distance | 136176 |
Downstream gene distance | 3939 |
SNP risk allele | rs2000260-A |
SNPs | rs2000260 |
Merged | 0 |
SNP id current | 2000260 |
Context | downstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.57 |
P value | 0.0000007 |
Pvalue mlog | 6.15490195998574 |
P value text | |
Or beta | 1.32 |
%95 Ci | [NR] |
Platform | Illumina [1468075] |
CNV | N |
Mapped trait | eosinophilic esophagitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004232 |
Study accession | GCST002527 |