SNP Detail For rs199950
1.Mapping Information
Human SNP ID rs199950
Human chromosome chr1
Human SNP position 181621722
Pig chromosome chr9
Pig SNP position 135245290
2.Annotation Information
PubMed ID25378290
JournalBehav Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/25378290
StudyThe National Longitudinal Study of Adolescent to Adult Health (Add Health) Sibling Pairs Genome-Wide Data.
Disease/TraitBody mass index (change over time)
Initial sample917 European ancestry individuals, 677 African American individuals, 209 Hispanic individuals, 73 Asian ancestry individuals, 8 Native American ancestry individuals, 2 individuals
Replication sampleNA
Region1q25.3
Chromosome idchr1
Chromosome position181621722
Reported geneCACNA1E
Mapped geneCACNA1E
Upstream gene id
Downstream gene id
SNP gene ids777
Upstream gene distance
Downstream gene distance
SNP risk allelers199950-G
SNPsrs199950
Merged0
SNP id current199950
Contextintron_variant
Intergenic0
Allele frequency0.31
P value0.000003
Pvalue mlog5.52287874528033
P value text
Or beta1
%95 Ci[0.58-1.42] unit increase
PlatformIllumina [717411]
CNVN
Mapped traitlongitudinal BMI measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0005937
Study accessionGCST002692