SNP Detail For rs1998598
1.Mapping Information
Human SNP ID rs1998598
Human chromosome chr1
Human SNP position 197758512
Pig chromosome chr10
Pig SNP position 25227861
2.Annotation Information
PubMed ID21102463
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21102463
StudyGenome-wide meta-analysis increases to 71 the number of confirmed Crohn__s disease susceptibility loci.
Disease/TraitCrohn__s disease
Initial sample6,333 European ancestry cases, 15,056 European ancestry controls
Replication sample15,694 European ancestry cases, 14,026 European ancestry controls, 414 European ancestry trios
Region1q31.3
Chromosome idchr1
Chromosome position197758512
Reported geneDENND1B
Mapped geneDENND1B
Upstream gene id
Downstream gene id
SNP gene ids163486
Upstream gene distance
Downstream gene distance
SNP risk allelers1998598-G
SNPsrs1998598
Merged0
SNP id current1998598
Contextintron_variant
Intergenic0
Allele frequency0.302
P value0.000000009
Pvalue mlog8.04575749056067
P value text
Or beta1.04
%95 Ci[1.00-1.09]
PlatformAffymetrix, Illumina [953241] (imputed)
CNVN
Mapped traitCrohn__s disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000384
Study accessionGCST000879