Human SNP ID | rs1997352 |
---|---|
Human chromosome | chr3 |
Human SNP position | 25496826 |
Pig chromosome | chr13 |
Pig SNP position | 14020788 |
PubMed ID | 22837378 |
---|---|
Journal | Am J Respir Crit Care Med |
Link | www.ncbi.nlm.nih.gov/pubmed/22837378 |
Study | Genome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction. |
Disease/Trait | Airflow obstruction |
Initial sample | up to 3,368 European ancestry cases, up to 29,507 European ancestry controls |
Replication sample | 331 European ancestry cases, 2,550 European ancestry controls |
Region | 3p24.2 |
Chromosome id | chr3 |
Chromosome position | 25496826 |
Reported gene | RARB |
Mapped gene | RARB |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5915 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1997352-? |
SNPs | rs1997352 |
Merged | 0 |
SNP id current | 1997352 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.74 |
P value | 0.0000009 |
Pvalue mlog | 6.04575749056067 |
P value text | (All) |
Or beta | 1.1905 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [up to 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892 |
Study accession | GCST001621 |