SNP Detail For rs1997352
1.Mapping Information
Human SNP ID rs1997352
Human chromosome chr3
Human SNP position 25496826
Pig chromosome chr13
Pig SNP position 14020788
2.Annotation Information
PubMed ID22837378
JournalAm J Respir Crit Care Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22837378
StudyGenome-wide association studies identify CHRNA5/3 and HTR4 in the development of airflow obstruction.
Disease/TraitAirflow obstruction
Initial sampleup to 3,368 European ancestry cases, up to 29,507 European ancestry controls
Replication sample331 European ancestry cases, 2,550 European ancestry controls
Region3p24.2
Chromosome idchr3
Chromosome position25496826
Reported geneRARB
Mapped geneRARB
Upstream gene id
Downstream gene id
SNP gene ids5915
Upstream gene distance
Downstream gene distance
SNP risk allelers1997352-?
SNPsrs1997352
Merged0
SNP id current1997352
Contextintron_variant
Intergenic0
Allele frequency0.74
P value0.0000009
Pvalue mlog6.04575749056067
P value text(All)
Or beta1.1905
%95 Ci[NR]
PlatformAffymetrix, Illumina [up to 2500000] (imputed)
CNVN
Mapped traitpulmonary function measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0003892
Study accessionGCST001621