SNP Detail For rs1995138
1.Mapping Information
Human SNP ID rs1995138
Human chromosome chr18
Human SNP position 54000198
Pig chromosome chr1
Pig SNP position 113803106
2.Annotation Information
PubMed ID24024966
JournalJ Clin Periodontol
Linkwww.ncbi.nlm.nih.gov/pubmed/24024966
StudyGenome-wide association study of chronic periodontitis in a general German population.
Disease/TraitPeriodontitis (Mean PAL)
Initial sampleup to 4,032 European ancestry individuals
Replication sampleNA
Region18q21.2
Chromosome idchr18
Chromosome position54000198
Reported geneMBD2
Mapped geneLOC105372122 - MBD2
Upstream gene id105372122
Downstream gene id8932
SNP gene ids
Upstream gene distance112889
Downstream gene distance151403
SNP risk allelers1995138-A
SNPsrs1995138
Merged0
SNP id current1995138
Contextintergenic_variant
Intergenic1
Allele frequency0.08
P value0.000004
Pvalue mlog5.39794000867203
P value text(Age 20-60 years)
Or beta0.0957
%95 Ci[0.055-0.136] unit increase
PlatformAffymetrix, Illumina [up to 17585496] (imputed)
CNVN
Mapped traitperiodontitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000649
Study accessionGCST002127