SNP Detail For rs1994969
1.Mapping Information
Human SNP ID rs1994969
Human chromosome chr17
Human SNP position 49003069
Pig chromosome chr12
Pig SNP position 25168392
2.Annotation Information
PubMed ID23704328
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23704328
StudyGenome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.
Disease/TraitPrimary tooth development (time to first tooth eruption)
Initial sample11,118 European ancestry individuals
Replication sample
Region17q21.32
Chromosome idchr17
Chromosome position49003069
Reported geneIGF2BP1
Mapped geneIGF2BP1
Upstream gene id
Downstream gene id
SNP gene ids10642
Upstream gene distance
Downstream gene distance
SNP risk allelers1994969-T
SNPsrs1994969
Merged0
SNP id current1994969
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000000002
Pvalue mlog13.698970004336
P value text
Or beta0.027
%95 Ci[-0.02592-0.07992] unit decrease
PlatformIllumina [2446724] (imputed)
CNVN
Mapped traittooth eruption
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0044691
Study accessionGCST002030
PubMed ID23704328
JournalHum Mol Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23704328
StudyGenome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances.
Disease/TraitPrimary tooth development (number of teeth)
Initial sample11,513 European ancestry individuals
Replication sample
Region17q21.32
Chromosome idchr17
Chromosome position49003069
Reported geneIGF2BP1
Mapped geneIGF2BP1
Upstream gene id
Downstream gene id
SNP gene ids10642
Upstream gene distance
Downstream gene distance
SNP risk allelers1994969-T
SNPsrs1994969
Merged0
SNP id current1994969
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.0000000000000007
Pvalue mlog15.1549019599857
P value text
Or beta0.19
%95 Ci[0.14-0.24] unit increase
PlatformIllumina [2446724] (imputed)
CNVN
Mapped traitodontogenesis
Mapped trait URIhttp://purl.obolibrary.org/obo/GO_0042476
Study accessionGCST002031