Human SNP ID | rs1994969 |
---|---|
Human chromosome | chr17 |
Human SNP position | 49003069 |
Pig chromosome | chr12 |
Pig SNP position | 25168392 |
PubMed ID | 23704328 |
---|---|
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
Disease/Trait | Primary tooth development (time to first tooth eruption) |
Initial sample | 11,118 European ancestry individuals |
Replication sample | |
Region | 17q21.32 |
Chromosome id | chr17 |
Chromosome position | 49003069 |
Reported gene | IGF2BP1 |
Mapped gene | IGF2BP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10642 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1994969-T |
SNPs | rs1994969 |
Merged | 0 |
SNP id current | 1994969 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000000002 |
Pvalue mlog | 13.698970004336 |
P value text | |
Or beta | 0.027 |
%95 Ci | [-0.02592-0.07992] unit decrease |
Platform | Illumina [2446724] (imputed) |
CNV | N |
Mapped trait | tooth eruption |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0044691 |
Study accession | GCST002030 |
PubMed ID | 23704328 |
Journal | Hum Mol Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23704328 |
Study | Genome-wide association study of primary tooth eruption identifies pleiotropic loci associated with height and craniofacial distances. |
Disease/Trait | Primary tooth development (number of teeth) |
Initial sample | 11,513 European ancestry individuals |
Replication sample | |
Region | 17q21.32 |
Chromosome id | chr17 |
Chromosome position | 49003069 |
Reported gene | IGF2BP1 |
Mapped gene | IGF2BP1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 10642 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1994969-T |
SNPs | rs1994969 |
Merged | 0 |
SNP id current | 1994969 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000000000000007 |
Pvalue mlog | 15.1549019599857 |
P value text | |
Or beta | 0.19 |
%95 Ci | [0.14-0.24] unit increase |
Platform | Illumina [2446724] (imputed) |
CNV | N |
Mapped trait | odontogenesis |
Mapped trait URI | http://purl.obolibrary.org/obo/GO_0042476 |
Study accession | GCST002031 |