SNP Detail For rs1993293
1.Mapping Information
Human SNP ID rs1993293
Human chromosome chr15
Human SNP position 99757458
Pig chromosome chr11
Pig SNP position 67728180
2.Annotation Information
PubMed ID23870195
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23870195
StudyGenetics of coronary artery calcification among African Americans, a meta-analysis.
Disease/TraitCoronary artery calcification
Initial sample5,823 African American individuals
Replication sample9,992 European ancestry individuals
Region15q26.3
Chromosome idchr15
Chromosome position99757458
Reported geneLYSMD4
Mapped geneLOC105371020
Upstream gene id
Downstream gene id
SNP gene ids105371020
Upstream gene distance
Downstream gene distance
SNP risk allelers1993293-A
SNPsrs1993293
Merged0
SNP id current1993293
Contextintergenic_variant
Intergenic0
Allele frequency0.73
P value0.000004
Pvalue mlog5.39794000867203
P value text(AA)
Or beta0.17
%95 Ci[0.092-0.248] unit increase
PlatformAffymetrix, Illumina [up to 2727966] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST002097