Human SNP ID | rs1992950 |
---|---|
Human chromosome | chr2 |
Human SNP position | 199425636 |
Pig chromosome | chr15 |
Pig SNP position | 114252406 |
PubMed ID | 20228799 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20228799 |
Study | Genome-wide association identifies multiple ulcerative colitis susceptibility loci. |
Disease/Trait | Ulcerative colitis |
Initial sample | 2,693 European ancestry cases, 6,791 European ancestry controls |
Replication sample | 2,009 European ancestry cases, 1,580 European ancestry controls |
Region | 2q33.1 |
Chromosome id | chr2 |
Chromosome position | 199425636 |
Reported gene | SATB2 |
Mapped gene | SATB2 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23314 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1992950-A |
SNPs | rs1992950 |
Merged | 0 |
SNP id current | 1992950 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000005 |
Pvalue mlog | 5.30102999566398 |
P value text | |
Or beta | 1.25 |
%95 Ci | |
Platform | Illumina [266047] |
CNV | N |
Mapped trait | ulcerative colitis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000729 |
Study accession | GCST000624 |