SNP Detail For rs1992950
1.Mapping Information
Human SNP ID rs1992950
Human chromosome chr2
Human SNP position 199425636
Pig chromosome chr15
Pig SNP position 114252406
2.Annotation Information
PubMed ID20228799
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/20228799
StudyGenome-wide association identifies multiple ulcerative colitis susceptibility loci.
Disease/TraitUlcerative colitis
Initial sample2,693 European ancestry cases, 6,791 European ancestry controls
Replication sample2,009 European ancestry cases, 1,580 European ancestry controls
Region2q33.1
Chromosome idchr2
Chromosome position199425636
Reported geneSATB2
Mapped geneSATB2
Upstream gene id
Downstream gene id
SNP gene ids23314
Upstream gene distance
Downstream gene distance
SNP risk allelers1992950-A
SNPsrs1992950
Merged0
SNP id current1992950
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000005
Pvalue mlog5.30102999566398
P value text
Or beta1.25
%95 Ci
PlatformIllumina [266047]
CNVN
Mapped traitulcerative colitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000729
Study accessionGCST000624