Human SNP ID | rs1983853 |
---|---|
Human chromosome | chr1 |
Human SNP position | 84845509 |
Pig chromosome | chr6 |
Pig SNP position | 119342146 |
PubMed ID | 18840781 |
---|---|
Journal | Diabetes |
Link | www.ncbi.nlm.nih.gov/pubmed/18840781 |
Study | Follow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes. |
Disease/Trait | Type 1 diabetes |
Initial sample | 563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios |
Replication sample | 3,303 European ancestry cases, 4,673 European ancestry controls |
Region | 1p22.3 |
Chromosome id | chr1 |
Chromosome position | 84845509 |
Reported gene | EDG7 |
Mapped gene | LPAR3 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 23566 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1983853-? |
SNPs | rs1983853 |
Merged | 0 |
SNP id current | 1983853 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 1.2 |
%95 Ci | [1.11-1.29] |
Platform | Illumina [up to 1000000] |
CNV | N |
Mapped trait | type I diabetes mellitus |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001359 |
Study accession | GCST000244 |