SNP Detail For rs1983853
1.Mapping Information
Human SNP ID rs1983853
Human chromosome chr1
Human SNP position 84845509
Pig chromosome chr6
Pig SNP position 119342146
2.Annotation Information
PubMed ID18840781
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/18840781
StudyFollow-up analysis of genome-wide association data identifies novel loci for type 1 diabetes.
Disease/TraitType 1 diabetes
Initial sample563 European ancestry cases, 1,146 European ancestry controls, 483 European ancestry trios
Replication sample3,303 European ancestry cases, 4,673 European ancestry controls
Region1p22.3
Chromosome idchr1
Chromosome position84845509
Reported geneEDG7
Mapped geneLPAR3
Upstream gene id
Downstream gene id
SNP gene ids23566
Upstream gene distance
Downstream gene distance
SNP risk allelers1983853-?
SNPsrs1983853
Merged0
SNP id current1983853
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta1.2
%95 Ci[1.11-1.29]
PlatformIllumina [up to 1000000]
CNVN
Mapped traittype I diabetes mellitus
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001359
Study accessionGCST000244