SNP Detail For rs1981997
1.Mapping Information
Human SNP ID rs1981997
Human chromosome chr17
Human SNP position 45979401
Pig chromosome chr12
Pig SNP position 17161884
2.Annotation Information
PubMed ID23583980
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23583980
StudyGenome-wide association study identifies multiple susceptibility loci for pulmonary fibrosis.
Disease/TraitInterstitial lung disease
Initial sample1,161 European ancestry cases, 4,683 European ancestry controls
Replication sample876 European ancestry cases, 1,890 European ancestry controls
Region17q21.31
Chromosome idchr17
Chromosome position45979401
Reported geneMAPT
Mapped geneMAPT
Upstream gene id
Downstream gene id
SNP gene ids4137
Upstream gene distance
Downstream gene distance
SNP risk allelers1981997-G
SNPsrs1981997
Merged0
SNP id current1981997
Contextnon_coding_transcript_exon_variant
Intergenic0
Allele frequency0.77
P value0.00000000000009
Pvalue mlog13.0457574905606
P value text
Or beta1.41
%95 Ci[1.28-1.56]
PlatformIllumina [439828]
CNVN
Mapped traitinterstitial lung disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004244
Study accessionGCST001968