Human SNP ID | rs1981483 |
---|---|
Human chromosome | chr16 |
Human SNP position | 580665 |
Pig chromosome | chr3 |
Pig SNP position | 41270898 |
PubMed ID | 22993228 |
---|---|
Journal | Ann Rheum Dis |
Link | www.ncbi.nlm.nih.gov/pubmed/22993228 |
Study | Novel genetic variants associated with lumbar disc degeneration in northern Europeans: a meta-analysis of 4600 subjects. |
Disease/Trait | Disc degeneration (lumbar) |
Initial sample | 4,683 European ancestry individuals |
Replication sample | NA |
Region | 16p13.3 |
Chromosome id | chr16 |
Chromosome position | 580665 |
Reported gene | PIGQ |
Mapped gene | PIGQ |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 9091 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1981483-A |
SNPs | rs1981483 |
Merged | 0 |
SNP id current | 1981483 |
Context | non_coding_transcript_exon_variant |
Intergenic | 0 |
Allele frequency | 0.42 |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | 0.11 |
%95 Ci | [0.065-0.155] unit increase |
Platform | Affymetrix, Illumina [2552511] (imputed) |
CNV | N |
Mapped trait | lumbar disc degeneration |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004994 |
Study accession | GCST001687 |