Human SNP ID | rs1980422 |
---|---|
Human chromosome | chr2 |
Human SNP position | 203745673 |
Pig chromosome | chr15 |
Pig SNP position | 118511716 |
PubMed ID | 24390342 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2q33.2 |
Chromosome id | chr2 |
Chromosome position | 203745673 |
Reported gene | CD28 |
Mapped gene | CD28 - KRT18P39 |
Upstream gene id | 940 |
Downstream gene id | 344462 |
SNP gene ids | |
Upstream gene distance | 6761 |
Downstream gene distance | 18560 |
SNP risk allele | rs1980422-C |
SNPs | rs1980422 |
Merged | 0 |
SNP id current | 1980422 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.19 |
P value | 0.00000000000003 |
Pvalue mlog | 13.5228787452803 |
P value text | |
Or beta | 1.12 |
%95 Ci | [1.09-1.16] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |
PubMed ID | 24390342 |
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/24390342 |
Study | Genetics of rheumatoid arthritis contributes to biology and drug discovery. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | up to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls |
Replication sample | up to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls |
Region | 2q33.2 |
Chromosome id | chr2 |
Chromosome position | 203745673 |
Reported gene | CD28 |
Mapped gene | CD28 - KRT18P39 |
Upstream gene id | 940 |
Downstream gene id | 344462 |
SNP gene ids | |
Upstream gene distance | 6761 |
Downstream gene distance | 18560 |
SNP risk allele | rs1980422-C |
SNPs | rs1980422 |
Merged | 0 |
SNP id current | 1980422 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.24 |
P value | 0.0000000000002 |
Pvalue mlog | 12.698970004336 |
P value text | (EA) |
Or beta | 1.13 |
%95 Ci | [1.09-1.17] |
Platform | Affymetrix, Illumina [up to 9739303] (imputed) |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST002318 |