SNP Detail For rs1978648
1.Mapping Information
Human SNP ID rs1978648
Human chromosome chr2
Human SNP position 43144403
Pig chromosome chr3
Pig SNP position 103330466
2.Annotation Information
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region2p21
Chromosome idchr2
Chromosome position43144403
Reported geneHAAO, ZFP36L2, THADA
Mapped geneLOC100506047
Upstream gene id
Downstream gene id
SNP gene ids100506047
Upstream gene distance
Downstream gene distance
SNP risk allelers1978648?
SNPsrs1978648
Merged0
SNP id current1978648
Contextregulatory_region_variant
Intergenic0
Allele frequency
P value0.0000005
Pvalue mlog6.30102999566398
P value text(SI)
Or beta0.2
%95 Ci[0.082-0.318] unit increase
PlatformIllumina [693128]
CNVN
Mapped traitinsulin sensitivity measurement, glucose homeostasis measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004471, http://www.ebi.ac.uk/efo/EFO_0006896
Study accessionGCST002726