SNP Detail For rs197770
1.Mapping Information
Human SNP ID rs197770
Human chromosome chr3
Human SNP position 37474336
Pig chromosome chr13
Pig SNP position 24231352
2.Annotation Information
PubMed ID22359512
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22359512
StudyGenome-wide association study identifies novel loci associated with circulating phospho- and sphingolipid concentrations.
Disease/TraitPhospholipid levels (plasma)
Initial sample4,034 European ancestry individuals
Replication sampleNA
Region3p22.2
Chromosome idchr3
Chromosome position37474336
Reported geneITGA9
Mapped geneITGA9
Upstream gene id
Downstream gene id
SNP gene ids3680
Upstream gene distance
Downstream gene distance
SNP risk allelers197770-?
SNPsrs197770
Merged0
SNP id current197770
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000002
Pvalue mlog7.69897000433601
P value text(levels)
Or beta0.8
%95 Ci[NR] % increase
PlatformIllumina [NR] (imputed)
CNVN
Mapped traitphospholipid measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004639
Study accessionGCST001414