Human SNP ID | rs1975197 |
---|---|
Human chromosome | chr9 |
Human SNP position | 8846955 |
Pig chromosome | chr1 |
Pig SNP position | 238408016 |
PubMed ID | 18660810 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/18660810 |
Study | PTPRD (protein tyrosine phosphatase receptor type delta) is associated with restless legs syndrome. |
Disease/Trait | Restless legs syndrome |
Initial sample | 628 European ancestry cases, 1,644 European ancestry controls |
Replication sample | 1,550 European ancestry cases, 2,269 European ancestry controls, 285 French Canadian founder cases, 842 French Canadian founder controls |
Region | 9p24.1 |
Chromosome id | chr9 |
Chromosome position | 8846955 |
Reported gene | PTPRD |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1975197-T |
SNPs | rs1975197 |
Merged | 0 |
SNP id current | 1975197 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.000000006 |
Pvalue mlog | 8.22184874961635 |
P value text | |
Or beta | 1.31 |
%95 Ci | [1.20-1.44] |
Platform | Affymetrix [208733] |
CNV | N |
Mapped trait | restless legs syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004270 |
Study accession | GCST000214 |
PubMed ID | 21779176 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21779176 |
Study | Genome-wide association study identifies novel restless legs syndrome susceptibility loci on 2p14 and 16q12.1. |
Disease/Trait | Restless legs syndrome |
Initial sample | 922 European ancestry cases, 1,526 European ancestry controls |
Replication sample | 3,935 European ancestry cases, 5,754 European ancestry controls |
Region | 9p24.1 |
Chromosome id | chr9 |
Chromosome position | 8846955 |
Reported gene | PTPRD |
Mapped gene | PTPRD |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5789 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1975197-A |
SNPs | rs1975197 |
Merged | 0 |
SNP id current | 1975197 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.16 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.29 |
%95 Ci | [1.19-1.40] |
Platform | Affymetrix [301406] |
CNV | N |
Mapped trait | restless legs syndrome |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004270 |
Study accession | GCST001159 |