Human SNP ID | rs1973993 |
---|---|
Human chromosome | chr1 |
Human SNP position | 96478438 |
Pig chromosome | chr4 |
Pig SNP position | 133094036 |
PubMed ID | 19079260 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/19079260 |
Study | Genome-wide association yields new sequence variants at seven loci that associate with measures of obesity. |
Disease/Trait | Weight |
Initial sample | 72,598 European ancestry individuals, 1,160 African American individuals |
Replication sample | Up to 11,036 European ancestry individuals, 32,615 individuals |
Region | 1p21.3 |
Chromosome id | chr1 |
Chromosome position | 96478438 |
Reported gene | NR |
Mapped gene | LOC101928241 - LOC105378866 |
Upstream gene id | 101928241 |
Downstream gene id | 105378866 |
SNP gene ids | |
Upstream gene distance | 104313 |
Downstream gene distance | 3990 |
SNP risk allele | rs1973993-C |
SNPs | rs1973993 |
Merged | 0 |
SNP id current | 1973993 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.63 |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | |
Or beta | 2.71 |
%95 Ci | [1.61-3.81] percentage SD increase |
Platform | Illumina [305846] |
CNV | N |
Mapped trait | body weight |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004338 |
Study accession | GCST000299 |