SNP Detail For rs1973993
1.Mapping Information
Human SNP ID rs1973993
Human chromosome chr1
Human SNP position 96478438
Pig chromosome chr4
Pig SNP position 133094036
2.Annotation Information
PubMed ID19079260
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/19079260
StudyGenome-wide association yields new sequence variants at seven loci that associate with measures of obesity.
Disease/TraitWeight
Initial sample72,598 European ancestry individuals, 1,160 African American individuals
Replication sampleUp to 11,036 European ancestry individuals, 32,615 individuals
Region1p21.3
Chromosome idchr1
Chromosome position96478438
Reported geneNR
Mapped geneLOC101928241 - LOC105378866
Upstream gene id101928241
Downstream gene id105378866
SNP gene ids
Upstream gene distance104313
Downstream gene distance3990
SNP risk allelers1973993-C
SNPsrs1973993
Merged0
SNP id current1973993
Contextintergenic_variant
Intergenic1
Allele frequency0.63
P value0.000001
Pvalue mlog6
P value text
Or beta2.71
%95 Ci[1.61-3.81] percentage SD increase
PlatformIllumina [305846]
CNVN
Mapped traitbody weight
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004338
Study accessionGCST000299