SNP Detail For rs1972809
1.Mapping Information
Human SNP ID rs1972809
Human chromosome chrX
Human SNP position 120733621
Pig chromosome chr7
Pig SNP position 124011607
2.Annotation Information
PubMed ID22808956
JournalN Engl J Med
Linkwww.ncbi.nlm.nih.gov/pubmed/22808956
StudyGenetically distinct subsets within ANCA-associated vasculitis.
Disease/TraitAntineutrophil cytoplasmic antibody-associated vasculitis
Initial sample914 European ancestry cases, 5,259 European ancestry controls
Replication sample1,454 European ancestry cases, 1,666 European ancestry controls
RegionXq24
Chromosome idchrX
Chromosome position120733621
Reported geneintergenic
Mapped geneLOC100128546
Upstream gene id
Downstream gene id
SNP gene ids100128546
Upstream gene distance
Downstream gene distance
SNP risk allelers1972809-?
SNPsrs1972809
Merged0
SNP id current1972809
Contextdownstream_gene_variant
Intergenic0
Allele frequencyNR
P value1E-24
Pvalue mlog24
P value text
Or beta1.28
%95 Ci[NR]
PlatformAffymetrix [NR]
CNVN
Mapped traitanti-neutrophil antibody associated vasculitis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004826
Study accessionGCST001613