Human SNP ID | rs1967017 |
---|---|
Human chromosome | chr1 |
Human SNP position | 145711421 |
Pig chromosome | chr4 |
Pig SNP position | 109331255 |
PubMed ID | 20884846 |
---|---|
Journal | Circ Cardiovasc Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/20884846 |
Study | Multiple genetic loci influence serum urate levels and their relationship with gout and cardiovascular disease risk factors. |
Disease/Trait | Urate levels |
Initial sample | 28,283 European ancestry individuals |
Replication sample | 22,054 European ancestry individuals |
Region | 1q21.1 |
Chromosome id | chr1 |
Chromosome position | 145711421 |
Reported gene | PDZK1 |
Mapped gene | PDZK1 - CD160 |
Upstream gene id | 5174 |
Downstream gene id | 11126 |
SNP gene ids | |
Upstream gene distance | 4021 |
Downstream gene distance | 8012 |
SNP risk allele | rs1967017-T |
SNPs | rs1967017 |
Merged | 0 |
SNP id current | 1967017 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.47 |
P value | 0.00000004 |
Pvalue mlog | 7.39794000867203 |
P value text | (Urate) |
Or beta | 3.33 |
%95 Ci | [2.15-4.51] umol/l increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | urate measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004531 |
Study accession | GCST000818 |
PubMed ID | 25811787 |
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/25811787 |
Study | Modulation of Genetic Associations with Serum Urate Levels by Body-Mass-Index in Humans. |
Disease/Trait | Urate levels in overweight individuals |
Initial sample | up to 10,058 European ancestry male individuals, up to 7,189 European ancestry female individuals |
Replication sample | NA |
Region | 1q21.1 |
Chromosome id | chr1 |
Chromosome position | 145711421 |
Reported gene | PDZK1 |
Mapped gene | PDZK1 - CD160 |
Upstream gene id | 5174 |
Downstream gene id | 11126 |
SNP gene ids | |
Upstream gene distance | 4021 |
Downstream gene distance | 8012 |
SNP risk allele | rs1967017-C |
SNPs | rs1967017 |
Merged | 0 |
SNP id current | 1967017 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.53 |
P value | 0.000000005 |
Pvalue mlog | 8.30102999566398 |
P value text | |
Or beta | 0.065 |
%95 Ci | [0.043-0.087] kg/m2 decrease |
Platform | Affymetrix, Illumina [at least 188473] (imputed) |
CNV | N |
Mapped trait | urate measurement, overweight body mass index status |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004531, http://www.ebi.ac.uk/efo/EFO_0005935 |
Study accession | GCST002829 |