SNP Detail For rs196701
1.Mapping Information
Human SNP ID rs196701
Human chromosome chr6
Human SNP position 79437470
Pig chromosome chr1
Pig SNP position 97553988
2.Annotation Information
PubMed ID25524916
JournalDiabetes
Linkwww.ncbi.nlm.nih.gov/pubmed/25524916
StudyGenetic Variants Associated with Quantitative Glucose Homeostasis Traits Translate to Type 2 Diabetes in Mexican Americans: The GUARDIAN (Genetics Underlying Diabetes in Hispanics) Consortium.
Disease/TraitGlucose homeostasis traits
Initial sampleup to 4,176 Mexican American individuals
Replication sampleNA
Region6q14.1
Chromosome idchr6
Chromosome position79437470
Reported geneHMGN3, LCA5
Mapped geneLOC102724109
Upstream gene id
Downstream gene id
SNP gene ids102724109
Upstream gene distance
Downstream gene distance
SNP risk allelers196701-?
SNPsrs196701
Merged0
SNP id current196701
Contextupstream_gene_variant
Intergenic0
Allele frequency
P value0.000001
Pvalue mlog6
P value text(SI)
Or beta0.35
%95 Ci[0.15-0.55] unit decrease
PlatformIllumina [693128]
CNVN
Mapped traitinsulin sensitivity measurement, glucose homeostasis measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004471, http://www.ebi.ac.uk/efo/EFO_0006896
Study accessionGCST002726