SNP Detail For rs1958589
1.Mapping Information
Human SNP ID rs1958589
Human chromosome chr14
Human SNP position 34375170
Pig chromosome chr7
Pig SNP position 70163509
2.Annotation Information
PubMed ID23936387
JournalPLoS One
Linkwww.ncbi.nlm.nih.gov/pubmed/23936387
StudyA possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease.
Disease/TraitCeliac disease
Initial sample206 European ancestry trios
Replication sampleNA
Region14q13.1
Chromosome idchr14
Chromosome position34375170
Reported geneEAPP, SNX6, C14orf147
Mapped geneLOC102724945 - SPTSSA
Upstream gene id102724945
Downstream gene id171546
SNP gene ids
Upstream gene distance171465
Downstream gene distance57768
SNP risk allelers1958589-C
SNPsrs1958589
Merged0
SNP id current1958589
Contextintron_variant
Intergenic1
Allele frequency
P value0.000004
Pvalue mlog5.39794000867203
P value text
Or beta
%95 Ci
PlatformIllumina [944512] (imputed)
CNVN
Mapped traitceliac disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001060
Study accessionGCST002112