Human SNP ID | rs1958589 |
---|---|
Human chromosome | chr14 |
Human SNP position | 34375170 |
Pig chromosome | chr7 |
Pig SNP position | 70163509 |
PubMed ID | 23936387 |
---|---|
Journal | PLoS One |
Link | www.ncbi.nlm.nih.gov/pubmed/23936387 |
Study | A possible mechanism behind autoimmune disorders discovered by genome-wide linkage and association analysis in celiac disease. |
Disease/Trait | Celiac disease |
Initial sample | 206 European ancestry trios |
Replication sample | NA |
Region | 14q13.1 |
Chromosome id | chr14 |
Chromosome position | 34375170 |
Reported gene | EAPP, SNX6, C14orf147 |
Mapped gene | LOC102724945 - SPTSSA |
Upstream gene id | 102724945 |
Downstream gene id | 171546 |
SNP gene ids | |
Upstream gene distance | 171465 |
Downstream gene distance | 57768 |
SNP risk allele | rs1958589-C |
SNPs | rs1958589 |
Merged | 0 |
SNP id current | 1958589 |
Context | intron_variant |
Intergenic | 1 |
Allele frequency | |
P value | 0.000004 |
Pvalue mlog | 5.39794000867203 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [944512] (imputed) |
CNV | N |
Mapped trait | celiac disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001060 |
Study accession | GCST002112 |