SNP Detail For rs1957895
1.Mapping Information
Human SNP ID rs1957895
Human chromosome chr14
Human SNP position 61441614
Pig chromosome chr1
Pig SNP position 211704585
2.Annotation Information
PubMed ID22446963
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/22446963
StudyMeta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population.
Disease/TraitRheumatoid arthritis
Initial sample4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls
Replication sample5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls
Region14q23.1
Chromosome idchr14
Chromosome position61441614
Reported genePRKCH
Mapped genePRKCH
Upstream gene id
Downstream gene id
SNP gene ids5583
Upstream gene distance
Downstream gene distance
SNP risk allelers1957895-G
SNPsrs1957895
Merged0
SNP id current1957895
Contextintron_variant
Intergenic0
Allele frequency0.39
P value0.0000004
Pvalue mlog6.39794000867203
P value text
Or beta1.09
%95 Ci[1.05-1.13]
PlatformAffymetrix, Illumina [1948139]
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST001454