Human SNP ID | rs1957895 |
---|---|
Human chromosome | chr14 |
Human SNP position | 61441614 |
Pig chromosome | chr1 |
Pig SNP position | 211704585 |
PubMed ID | 22446963 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/22446963 |
Study | Meta-analysis identifies nine new loci associated with rheumatoid arthritis in the Japanese population. |
Disease/Trait | Rheumatoid arthritis |
Initial sample | 4,074 Japanese ancestry cases, 16,891 Japanese ancestry controls |
Replication sample | 5,277 Japanese ancestry cases, 21,684 Japanese ancestry controls |
Region | 14q23.1 |
Chromosome id | chr14 |
Chromosome position | 61441614 |
Reported gene | PRKCH |
Mapped gene | PRKCH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5583 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1957895-G |
SNPs | rs1957895 |
Merged | 0 |
SNP id current | 1957895 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.39 |
P value | 0.0000004 |
Pvalue mlog | 6.39794000867203 |
P value text | |
Or beta | 1.09 |
%95 Ci | [1.05-1.13] |
Platform | Affymetrix, Illumina [1948139] |
CNV | N |
Mapped trait | rheumatoid arthritis |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000685 |
Study accession | GCST001454 |