Human SNP ID | rs1957894 |
---|---|
Human chromosome | chr14 |
Human SNP position | 61441393 |
Pig chromosome | chr1 |
Pig SNP position | 211704365 |
PubMed ID | 23563609 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563609 |
Study | Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity. |
Disease/Trait | Obesity (early onset extreme) |
Initial sample | 1,509 European ancestry cases, 5,380 European ancestry controls |
Replication sample | 971 European ancestry cases, 1,990 European ancestry controls |
Region | 14q23.1 |
Chromosome id | chr14 |
Chromosome position | 61441393 |
Reported gene | PRKCH |
Mapped gene | PRKCH |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 5583 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1957894-T |
SNPs | rs1957894 |
Merged | 0 |
SNP id current | 1957894 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.06 |
P value | 0.0000000003 |
Pvalue mlog | 9.52287874528033 |
P value text | |
Or beta | 1.5 |
%95 Ci | [1.32-1.70] |
Platform | Affymetrix [~ 2000000] (imputed) |
CNV | N |
Mapped trait | obesity |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0001073 |
Study accession | GCST001957 |