SNP Detail For rs1957894
1.Mapping Information
Human SNP ID rs1957894
Human chromosome chr14
Human SNP position 61441393
Pig chromosome chr1
Pig SNP position 211704365
2.Annotation Information
PubMed ID23563609
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23563609
StudyGenome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
Disease/TraitObesity (early onset extreme)
Initial sample1,509 European ancestry cases, 5,380 European ancestry controls
Replication sample971 European ancestry cases, 1,990 European ancestry controls
Region14q23.1
Chromosome idchr14
Chromosome position61441393
Reported genePRKCH
Mapped genePRKCH
Upstream gene id
Downstream gene id
SNP gene ids5583
Upstream gene distance
Downstream gene distance
SNP risk allelers1957894-T
SNPsrs1957894
Merged0
SNP id current1957894
Contextintron_variant
Intergenic0
Allele frequency0.06
P value0.0000000003
Pvalue mlog9.52287874528033
P value text
Or beta1.5
%95 Ci[1.32-1.70]
PlatformAffymetrix [~ 2000000] (imputed)
CNVN
Mapped traitobesity
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0001073
Study accessionGCST001957