SNP Detail For rs1953600
1.Mapping Information
Human SNP ID rs1953600
Human chromosome chr10
Human SNP position 80151969
Pig chromosome chr14
Pig SNP position 88492948
2.Annotation Information
PubMed ID22936702
JournalEur Respir J
Linkwww.ncbi.nlm.nih.gov/pubmed/22936702
StudyGenome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis.
Disease/TraitSarcoidosis
Initial sample637 European ancestry cases, 1,233 European ancestry controls
Replication sample3,121 European ancestry cases, 4,284 European ancestry controls
Region10q22.3
Chromosome idchr10
Chromosome position80151969
Reported geneANXA11
Mapped genePLAC9 - ANXA11
Upstream gene id219348
Downstream gene id311
SNP gene ids
Upstream gene distance6941
Downstream gene distance641
SNP risk allelers1953600-?
SNPsrs1953600
Merged0
SNP id current1953600
Context3_prime_UTR_variant
Intergenic1
Allele frequencyNR
P value0.000001
Pvalue mlog6
P value text(Chronic)
Or beta
%95 Ci
PlatformAffymetrix [677619]
CNVN
Mapped traitSarcoidosis
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_797
Study accessionGCST001654