Human SNP ID | rs1953600 |
---|---|
Human chromosome | chr10 |
Human SNP position | 80151969 |
Pig chromosome | chr14 |
Pig SNP position | 88492948 |
PubMed ID | 22936702 |
---|---|
Journal | Eur Respir J |
Link | www.ncbi.nlm.nih.gov/pubmed/22936702 |
Study | Genome-wide association analysis reveals 12q13.3-q14.1 as new risk locus for sarcoidosis. |
Disease/Trait | Sarcoidosis |
Initial sample | 637 European ancestry cases, 1,233 European ancestry controls |
Replication sample | 3,121 European ancestry cases, 4,284 European ancestry controls |
Region | 10q22.3 |
Chromosome id | chr10 |
Chromosome position | 80151969 |
Reported gene | ANXA11 |
Mapped gene | PLAC9 - ANXA11 |
Upstream gene id | 219348 |
Downstream gene id | 311 |
SNP gene ids | |
Upstream gene distance | 6941 |
Downstream gene distance | 641 |
SNP risk allele | rs1953600-? |
SNPs | rs1953600 |
Merged | 0 |
SNP id current | 1953600 |
Context | 3_prime_UTR_variant |
Intergenic | 1 |
Allele frequency | NR |
P value | 0.000001 |
Pvalue mlog | 6 |
P value text | (Chronic) |
Or beta | |
%95 Ci | |
Platform | Affymetrix [677619] |
CNV | N |
Mapped trait | Sarcoidosis |
Mapped trait URI | http://www.orpha.net/ORDO/Orphanet_797 |
Study accession | GCST001654 |