Human SNP ID | rs1953126 |
---|---|
Human chromosome | chr9 |
Human SNP position | 120878222 |
Pig chromosome | chr1 |
Pig SNP position | 293013395 |
PubMed ID | 21383967 |
---|---|
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21383967 |
Study | Meta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci. |
Disease/Trait | Celiac disease or Rheumatoid arthritis |
Initial sample | 4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls |
Replication sample | 2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls |
Region | 9q33.2 |
Chromosome id | chr9 |
Chromosome position | 120878222 |
Reported gene | TRAF1 |
Mapped gene | PHF19 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 26147 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1953126-T |
SNPs | rs1953126 |
Merged | 0 |
SNP id current | 1953126 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.00000000004 |
Pvalue mlog | 10.397940008672 |
P value text | |
Or beta | |
%95 Ci | |
Platform | Illumina [472854] |
CNV | N |
Mapped trait | immune system disease |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000540 |
Study accession | GCST000987 |