SNP Detail For rs1953126
1.Mapping Information
Human SNP ID rs1953126
Human chromosome chr9
Human SNP position 120878222
Pig chromosome chr1
Pig SNP position 293013395
2.Annotation Information
PubMed ID21383967
JournalPLoS Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21383967
StudyMeta-analysis of genome-wide association studies in celiac disease and rheumatoid arthritis identifies fourteen non-HLA shared loci.
Disease/TraitCeliac disease or Rheumatoid arthritis
Initial sample4,533 European ancestry celiac disease cases, 5,539 European ancestry rheumatoid arthritis cases, 27,981 European ancestry controls
Replication sample2,169 European ancestry celiac disease cases, 2,845 European ancestry rheumatoid arthritis cases, 7,199 European ancestry controls
Region9q33.2
Chromosome idchr9
Chromosome position120878222
Reported geneTRAF1
Mapped genePHF19
Upstream gene id
Downstream gene id
SNP gene ids26147
Upstream gene distance
Downstream gene distance
SNP risk allelers1953126-T
SNPsrs1953126
Merged0
SNP id current1953126
Contextintron_variant
Intergenic0
Allele frequencyNR
P value0.00000000004
Pvalue mlog10.397940008672
P value text
Or beta
%95 Ci
PlatformIllumina [472854]
CNVN
Mapped traitimmune system disease
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000540
Study accessionGCST000987