SNP Detail For rs1950897
1.Mapping Information
Human SNP ID rs1950897
Human chromosome chr14
Human SNP position 68293424
Pig chromosome chr7
Pig SNP position 98324137
2.Annotation Information
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region14q24.1
Chromosome idchr14
Chromosome position68293424
Reported geneRAD51B
Mapped geneRAD51B
Upstream gene id
Downstream gene id
SNP gene ids5890
Upstream gene distance
Downstream gene distance
SNP risk allelers1950897-T
SNPsrs1950897
Merged0
SNP id current1950897
Contextintron_variant
Intergenic0
Allele frequency0.76
P value0.00000000008
Pvalue mlog10.096910013008
P value text
Or beta1.1
%95 Ci[1.07-1.13]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318
PubMed ID24390342
JournalNature
Linkwww.ncbi.nlm.nih.gov/pubmed/24390342
StudyGenetics of rheumatoid arthritis contributes to biology and drug discovery.
Disease/TraitRheumatoid arthritis
Initial sampleup to 14,361 European ancestry cases, up to 42,923 European ancestry controls, up to 4,873 East Asian ancestry cases, up to 17,642 East Asian ancestry controls
Replication sampleup to 3,775 European ancestry cases, up to 5,801 European ancestry controls, up to 6,871 East Asian ancestry cases, up to 6,392 East Asian ancestry controls
Region14q24.1
Chromosome idchr14
Chromosome position68293424
Reported geneRAD51B
Mapped geneRAD51B
Upstream gene id
Downstream gene id
SNP gene ids5890
Upstream gene distance
Downstream gene distance
SNP risk allelers1950897-T
SNPsrs1950897
Merged0
SNP id current1950897
Contextintron_variant
Intergenic0
Allele frequency0.71
P value0.00000005
Pvalue mlog7.30102999566398
P value text(EA)
Or beta1.09
%95 Ci[1.06-1.12]
PlatformAffymetrix, Illumina [up to 9739303] (imputed)
CNVN
Mapped traitrheumatoid arthritis
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0000685
Study accessionGCST002318