Human SNP ID | rs1950500 |
---|---|
Human chromosome | chr14 |
Human SNP position | 24361644 |
Pig chromosome | chr7 |
Pig SNP position | 80207320 |
PubMed ID | 20881960 |
---|---|
Journal | Nature |
Link | www.ncbi.nlm.nih.gov/pubmed/20881960 |
Study | Hundreds of variants clustered in genomic loci and biological pathways affect human height. |
Disease/Trait | Height |
Initial sample | 133,653 European ancestry individuals |
Replication sample | 50,074 European ancestry individuals |
Region | 14q12 |
Chromosome id | chr14 |
Chromosome position | 24361644 |
Reported gene | NFATC4 |
Mapped gene | RIPK3 - NFATC4 |
Upstream gene id | 11035 |
Downstream gene id | 4776 |
SNP gene ids | |
Upstream gene distance | 21608 |
Downstream gene distance | 5267 |
SNP risk allele | rs1950500-T |
SNPs | rs1950500 |
Merged | 0 |
SNP id current | 1950500 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.29 |
P value | 0.000000000000000002 |
Pvalue mlog | 17.698970004336 |
P value text | |
Or beta | 0.034 |
%95 Ci | [NR] unit increase |
Platform | Affymetrix, Illumina [2834208] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST000817 |
PubMed ID | 23563607 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23563607 |
Study | Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture. |
Disease/Trait | Height |
Initial sample | 8,097 European ancestry tall individuals, 8,099 European ancestry short individuals |
Replication sample | 4,872 European ancestry tall individuals, 4,831 European ancestry short individuals |
Region | 14q12 |
Chromosome id | chr14 |
Chromosome position | 24361644 |
Reported gene | NFATC4 |
Mapped gene | RIPK3 - NFATC4 |
Upstream gene id | 11035 |
Downstream gene id | 4776 |
SNP gene ids | |
Upstream gene distance | 21608 |
Downstream gene distance | 5267 |
SNP risk allele | rs1950500-T |
SNPs | rs1950500 |
Merged | 0 |
SNP id current | 1950500 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.3 |
P value | 0.00000000001 |
Pvalue mlog | 11 |
P value text | |
Or beta | 1.16 |
%95 Ci | [NR] |
Platform | Affymetrix, Illumina [~ 2800000] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST001956 |
PubMed ID | 25282103 |
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/25282103 |
Study | Defining the role of common variation in the genomic and biological architecture of adult human height. |
Disease/Trait | Height |
Initial sample | 253,288 European ancestry individuals |
Replication sample | 80,067 European ancestry individuals |
Region | 14q12 |
Chromosome id | chr14 |
Chromosome position | 24361644 |
Reported gene | NFATC4 |
Mapped gene | RIPK3 - NFATC4 |
Upstream gene id | 11035 |
Downstream gene id | 4776 |
SNP gene ids | |
Upstream gene distance | 21608 |
Downstream gene distance | 5267 |
SNP risk allele | rs1950500-T |
SNPs | rs1950500 |
Merged | 0 |
SNP id current | 1950500 |
Context | upstream_gene_variant |
Intergenic | 1 |
Allele frequency | 0.296 |
P value | 3E-22 |
Pvalue mlog | 21.5228787452803 |
P value text | |
Or beta | 0.031 |
%95 Ci | [0.025-0.037] unit increase |
Platform | Affymetrix, Illumina, Perlegen [2550858] (imputed) |
CNV | N |
Mapped trait | body height |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004339 |
Study accession | GCST002647 |