Human SNP ID | rs1944766 |
---|---|
Human chromosome | chr9 |
Human SNP position | 18215282 |
Pig chromosome | chr1 |
Pig SNP position | 228202114 |
PubMed ID | 21897333 |
---|---|
Journal | Pharmacogenet Genomics |
Link | www.ncbi.nlm.nih.gov/pubmed/21897333 |
Study | Genes linked to energy metabolism and immunoregulatory mechanisms are associated with subcutaneous adipose tissue distribution in HIV-infected men. |
Disease/Trait | Fat distribution (HIV) |
Initial sample | 192 European ancestry male cases |
Replication sample | NA |
Region | 9p22.2 |
Chromosome id | chr9 |
Chromosome position | 18215282 |
Reported gene | ADAMTSL1 |
Mapped gene | ADAMTSL1 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 92949 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1944766-C |
SNPs | rs1944766 |
Merged | 0 |
SNP id current | 1944766 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | 0.44 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (univariate, upper trunk) |
Or beta | |
%95 Ci | |
Platform | Illumina [319818] |
CNV | N |
Mapped trait | HIV-1 infection, body fat distribution |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0000180, http://www.ebi.ac.uk/efo/EFO_0004341 |
Study accession | GCST001343 |