SNP Detail For rs1937920
1.Mapping Information
Human SNP ID rs1937920
Human chromosome chr10
Human SNP position 5119763
Pig chromosome chr10
Pig SNP position 71895933
2.Annotation Information
PubMed ID23509962
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23509962
StudyA genome-wide search for common SNP x SNP interactions on the risk of venous thrombosis.
Disease/TraitVenous thromboembolism (SNP x SNP interaction)
Initial sample411 European ancestry cases, 1,228 European ancestry controls
Replication sample1,542 European ancestry cases, 1,110 European ancestry controls
Region1q43 x 10p15.1
Chromosome idchr1 x 10
Chromosome position239882608 x 5119763
Reported geneNR x NR
Mapped geneCHRM3 x AKR1C3 - LOC105376377
Upstream gene id
Downstream gene id
SNP gene ids
Upstream gene distance
Downstream gene distance
SNP risk allelers536477-? x rs1937920-?
SNPsrs536477 x rs1937920
Merged0
SNP id current
Contextintron_variant x downstream_gene_variant
Intergenic
Allele frequency
P value0.000000003
Pvalue mlog8.52287874528033
P value text
Or beta1.5873
%95 Ci[NR]
PlatformIllumina [291872]
CNVN
Mapped traitvenous thromboembolism
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004286
Study accessionGCST001913