SNP Detail For rs1937579
1.Mapping Information
Human SNP ID rs1937579
Human chromosome chr6
Human SNP position 153756058
Pig chromosome chr1
Pig SNP position 15129154
2.Annotation Information
PubMed ID23870195
JournalBMC Med Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/23870195
StudyGenetics of coronary artery calcification among African Americans, a meta-analysis.
Disease/TraitCoronary artery calcification
Initial sample5,823 African American individuals
Replication sample9,992 European ancestry individuals
Region6q25.2
Chromosome idchr6
Chromosome position153756058
Reported geneC6orf10
Mapped geneLOC105378066 - HMGB3P19
Upstream gene id105378066
Downstream gene id729635
SNP gene ids
Upstream gene distance328721
Downstream gene distance182203
SNP risk allelers1937579-T
SNPsrs1937579
Merged0
SNP id current1937579
Contextintergenic_variant
Intergenic1
Allele frequency0.85
P value0.000003
Pvalue mlog5.52287874528033
P value text(AA)
Or beta0.19
%95 Ci[0.11-0.27] unit increase
PlatformAffymetrix, Illumina [up to 2727966] (imputed)
CNVN
Mapped traitcoronary artery calcification
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004723
Study accessionGCST002097