Human SNP ID | rs1937579 |
---|---|
Human chromosome | chr6 |
Human SNP position | 153756058 |
Pig chromosome | chr1 |
Pig SNP position | 15129154 |
PubMed ID | 23870195 |
---|---|
Journal | BMC Med Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23870195 |
Study | Genetics of coronary artery calcification among African Americans, a meta-analysis. |
Disease/Trait | Coronary artery calcification |
Initial sample | 5,823 African American individuals |
Replication sample | 9,992 European ancestry individuals |
Region | 6q25.2 |
Chromosome id | chr6 |
Chromosome position | 153756058 |
Reported gene | C6orf10 |
Mapped gene | LOC105378066 - HMGB3P19 |
Upstream gene id | 105378066 |
Downstream gene id | 729635 |
SNP gene ids | |
Upstream gene distance | 328721 |
Downstream gene distance | 182203 |
SNP risk allele | rs1937579-T |
SNPs | rs1937579 |
Merged | 0 |
SNP id current | 1937579 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.85 |
P value | 0.000003 |
Pvalue mlog | 5.52287874528033 |
P value text | (AA) |
Or beta | 0.19 |
%95 Ci | [0.11-0.27] unit increase |
Platform | Affymetrix, Illumina [up to 2727966] (imputed) |
CNV | N |
Mapped trait | coronary artery calcification |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004723 |
Study accession | GCST002097 |