Human SNP ID | rs193741 |
---|---|
Human chromosome | chr5 |
Human SNP position | 25692864 |
Pig chromosome | chr16 |
Pig SNP position | 13601803 |
PubMed ID | 23279374 |
---|---|
Journal | J Thromb Haemost |
Link | www.ncbi.nlm.nih.gov/pubmed/23279374 |
Study | Genetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain. |
Disease/Trait | β2-Glycoprotein I (β2-GPI) plasma levels |
Initial sample | 306 European ancestry individuals |
Replication sample | NA |
Region | 5p14.1 |
Chromosome id | chr5 |
Chromosome position | 25692864 |
Reported gene | CDH10, CDH9 |
Mapped gene | LOC105374693 - MSNP1 |
Upstream gene id | 105374693 |
Downstream gene id | 4479 |
SNP gene ids | |
Upstream gene distance | 171873 |
Downstream gene distance | 216443 |
SNP risk allele | rs193741-A |
SNPs | rs193741 |
Merged | 0 |
SNP id current | 193741 |
Context | intergenic_variant |
Intergenic | 1 |
Allele frequency | 0.14 |
P value | 0.000002 |
Pvalue mlog | 5.69897000433601 |
P value text | |
Or beta | 0.64 |
%95 Ci | unit decrease |
Platform | Illumina [283437] |
CNV | N |
Mapped trait | glycoprotein measurement |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004555 |
Study accession | GCST001800 |