SNP Detail For rs193741
1.Mapping Information
Human SNP ID rs193741
Human chromosome chr5
Human SNP position 25692864
Pig chromosome chr16
Pig SNP position 13601803
2.Annotation Information
PubMed ID23279374
JournalJ Thromb Haemost
Linkwww.ncbi.nlm.nih.gov/pubmed/23279374
StudyGenetic determinants of plasma β₂-glycoprotein I levels: a genome-wide association study in extended pedigrees from Spain.
Disease/Traitβ2-Glycoprotein I (β2-GPI) plasma levels
Initial sample306 European ancestry individuals
Replication sampleNA
Region5p14.1
Chromosome idchr5
Chromosome position25692864
Reported geneCDH10, CDH9
Mapped geneLOC105374693 - MSNP1
Upstream gene id105374693
Downstream gene id4479
SNP gene ids
Upstream gene distance171873
Downstream gene distance216443
SNP risk allelers193741-A
SNPsrs193741
Merged0
SNP id current193741
Contextintergenic_variant
Intergenic1
Allele frequency0.14
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.64
%95 Ciunit decrease
PlatformIllumina [283437]
CNVN
Mapped traitglycoprotein measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0004555
Study accessionGCST001800