SNP Detail For rs1934179
1.Mapping Information
Human SNP ID rs1934179
Human chromosome chrX
Human SNP position 50439186
Pig chromosome chrX
Pig SNP position 49069284
2.Annotation Information
PubMed ID21113153
JournalNat Genet
Linkwww.ncbi.nlm.nih.gov/pubmed/21113153
StudyCommon variants in DGKK are strongly associated with risk of hypospadias.
Disease/TraitHypospadias
Initial sample436 European ancestry cases, 494 European ancestry controls
Replication sample133 European ancestry cases and their parents, 266 European ancestry cases, 402 European ancestry controls
RegionXp11.22
Chromosome idchrX
Chromosome position50439186
Reported geneDGKK
Mapped geneDGKK
Upstream gene id
Downstream gene id
SNP gene ids139189
Upstream gene distance
Downstream gene distance
SNP risk allelers1934179-A
SNPsrs1934179
Merged0
SNP id current1934179
Contextintron_variant
Intergenic0
Allele frequency0.33
P value3E-21
Pvalue mlog20.5228787452803
P value text
Or beta2.6
%95 Ci[2.1-3.1]
PlatformAffymetrix [574400]
CNVN
Mapped traitFamilial hypospadias
Mapped trait URIhttp://www.orpha.net/ORDO/Orphanet_440
Study accessionGCST000888