SNP Detail For rs193189882
1.Mapping Information
Human SNP ID rs193189882
Human chromosome chr10
Human SNP position 128584974
Pig chromosome chr14
Pig SNP position 149574351
2.Annotation Information
PubMed ID24159190
JournalEur Heart J
Linkwww.ncbi.nlm.nih.gov/pubmed/24159190
StudyGenome-wide association study on dimethylarginines reveals novel AGXT2 variants associated with heart rate variability but not with overall mortality.
Disease/TraitAsymmetrical dimethylarginine levels
Initial sample5110 European ancestry individuals
Replication sampleNA
Region10q26.2
Chromosome idchr10
Chromosome position128584974
Reported geneintergenic
Mapped geneLINC01163 - LOC105378554
Upstream gene id101927381
Downstream gene id105378554
SNP gene ids
Upstream gene distance267248
Downstream gene distance100430
SNP risk allelers193189882-A
SNPsrs193189882
Merged0
SNP id current193189882
Contextintergenic_variant
Intergenic1
Allele frequency0.009
P value0.000002
Pvalue mlog5.69897000433601
P value text
Or beta0.71
%95 Ci[0.42-1] unit decrease
PlatformAffymetrix, Illumina [10085758] (imputed)
CNVN
Mapped traitasymmetrical dimethylarginine measurement, serum dimethylarginine measurement
Mapped trait URIhttp://www.ebi.ac.uk/efo/EFO_0006522, http://www.ebi.ac.uk/efo/EFO_0005418
Study accessionGCST002241