Human SNP ID | rs1928168 |
---|---|
Human chromosome | chr6 |
Human SNP position | 22017509 |
Pig chromosome | chr7 |
Pig SNP position | 18197089 |
PubMed ID | 21946350 |
---|---|
Journal | Nat Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/21946350 |
Study | Genome-wide association and large-scale follow up identifies 16 new loci influencing lung function. |
Disease/Trait | Pulmonary function |
Initial sample | 48,201 European ancestry individuals |
Replication sample | 46,411 European ancestry individuals |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 22017509 |
Reported gene | AK026189 |
Mapped gene | CASC15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 401237 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1928168-T |
SNPs | rs1928168 |
Merged | 0 |
SNP id current | 1928168 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (FEV1/FVC) |
Or beta | 0.028 |
%95 Ci | [0.018-0.038] unit increase |
Platform | Affymetrix, Illumina [~ 2500000] (imputed) |
CNV | N |
Mapped trait | pulmonary function measurement, FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0003892, http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001248 |
PubMed ID | 23284291 |
Journal | PLoS Genet |
Link | www.ncbi.nlm.nih.gov/pubmed/23284291 |
Study | Genome-wide joint meta-analysis of SNP and SNP-by-smoking interaction identifies novel loci for pulmonary function. |
Disease/Trait | Pulmonary function (interaction) |
Initial sample | 50,047 European ancestry individuals |
Replication sample | NA |
Region | 6p22.3 |
Chromosome id | chr6 |
Chromosome position | 22017509 |
Reported gene | SOX4, PRL |
Mapped gene | CASC15 |
Upstream gene id | |
Downstream gene id | |
SNP gene ids | 401237 |
Upstream gene distance | |
Downstream gene distance | |
SNP risk allele | rs1928168-T |
SNPs | rs1928168 |
Merged | 0 |
SNP id current | 1928168 |
Context | intron_variant |
Intergenic | 0 |
Allele frequency | NR |
P value | 0.0000002 |
Pvalue mlog | 6.69897000433601 |
P value text | (FEV1/FVC, Ever-smoking) |
Or beta | |
%95 Ci | |
Platform | NR [~ 2500000] (imputed) |
CNV | N |
Mapped trait | FEV/FEC ratio |
Mapped trait URI | http://www.ebi.ac.uk/efo/EFO_0004713 |
Study accession | GCST001784 |